Description
RNA Structure Prediction, 1st ed. 2023
Methods in Molecular Biology Series, Vol. 2586
Language: EnglishSubjects for RNA Structure Prediction:
Publication date: 01-2024
290 p. · 17.8x25.4 cm · Paperback
Publication date: 01-2023
290 p. · 17.8x25.4 cm · Hardback
Description
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1. Rtools: A Web Server for Various Secondary Structural Analyses on Single RNA Sequences
Yukiteru Ono and Kiyoshi Asai
2. Linear-Time Algorithms for RNA Structure Prediction
He Zhang, Liang Zhang, Kaibo Liu, Sizhen Li, David H. Mathews, and Liang Huang
3. Genome-Wide RNA Secondary Structure Prediction
Risa Karakida Kawaguchi and Hisanori Kiryu
4. Nucleic Acid Structure Prediction Including Pseudoknots through Direct Enumeration of States: A User's Guide to the LandscapeFold Algorithm
Ofer Kimchi, Michael P. Brenner, and Lucy J. Colwell
5. Metrics for RNA Secondary Structure Comparison
Feiqi Wang, Tatsuya Akutsu, and Tomoya Mori
6. RNA Secondary Structure Prediction Based on Energy Models
Manato Akiyama and Kengo Sato
7. RNA Secondary Structure Alteration Caused by Single Nucleotide Variants
Risa Karakida Kawaguchi and Hisanori Kiryu
8. Evolutionary Conservation of RNA Secondary Structure
Maria Beatriz Walter Costa
9. Network-Based Structural Alignment of RNA Sequences Using TOPAS
Chun-Chi Chen, Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon
10. Fast RNA-RNA Interaction Prediction Methods for Interaction Analysis of Transcriptome-Scale Large Datasets
Tsukasa Fukunaga and Michiaki Hamada
11. Web Services for RNA-RNA Interaction Prediction
Tsukasa Fukunaga, Junichi Iwakiri, and Michiaki Hamada
12. ResidualBind: Uncovering Sequence-Structure Preferences of RNA-Binding Proteins with Deep Neural Networks
Peter K. Koo, Matt Ploenzke, Praveen Anand, Steffan Paul, and Antonio Majdandzic
13. RNA Structure Determination by High-Throughput Structural Analysis
Naoki Takizawa
14. RNA 3D Modeling with FARFAR2, Online
Andrew Watkins and Rhiju Das
15. Automated 3D Design and Evaluation of RNA Nanostructures with RNAMake
Chris P. Jurich and Joseph D. Yesselman
16. RNA 3D Structure Comparison Using RNA-Puzzles Toolkit
Marcin Magnus and Zhichao Miao
Includes cutting-edge techniques
Provides step-by-step detail essential for reproducible results
Contains key implementation advice from the experts