Description
Nitrogen Fixation, Softcover reprint of the original 1st ed. 2011
Methods and Protocols
Methods in Molecular Biology Series, Vol. 766
Coordinator: Ribbe Markus W.
Language: EnglishSubject for Nitrogen Fixation:
Publication date: 08-2016
Support: Print on demand
Publication date: 08-2011
326 p. · 17.8x25.4 cm · Hardback
Description
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Few problems in protein biochemistry have proven to be as challenging and recalcitrant as the molecular description of nitrogenase, the catalyst of one of the most remarkable chemical transformations in biological systems: the nucleotide-dependent reduction of atmospheric dinitrogen to bioavailable ammonia. In Nitrogen Fixation: Methods and Protocols, recognized experts in the field provide an up-to-date, in-depth overview of the methods that have been applied to studying the nitrogenase at a molecular level, ranging from genetic, biochemical, spectroscopic, and chemical methods to theoretical calculations. In addition, techniques used to study an enzyme system that is homologous to nitrogenase are described in this book. Written in the highly successful Methods in Molecular Biology? series format, methods chapters include introductions to their respective chapters, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Practical and cutting-edge, Nitrogen Fixation: Methods and Protocols will be useful for anyone interested in nitrogenase research and willing to venture further toward addressing the remaining mechanistic and biosynthetic questions of this fascinating enzyme system.
Part I: Nitrogen Fixation
1. Historic Overview of Nitrogenase Research
Yilin Hu and Markus W. Ribbe
2. Mechanism of Mo-Dependent Nitrogenase
Zhi-Yong Yang, Karamatullah Danyal, and Lance C. Seefeldt
3. Assembly of Nitrogenase MoFe Protein
Chi-Chung Lee, Aaron W. Fay, Jared A. Wiig, Markus W. Ribbe, and Yilin Hu
4. Genomic Analysis of Nitrogen Fixation
Ina P. O’Carroll and Patricia C. Dos Santos
5. Enzymatic Systems with Homology to Nitrogenase
Markus J. Bröcker and Jürgen Moser
Part II: Genetic and Biochemical Methods
6. Molecular Biology and Genetic Engineering in Nitrogen Fixation
Patricia Dos Santos
7. Purification of Nitrogenase Proteins
Jared A. Wiig, Chi-Chung Lee, Aaron W. Fay, Yilin Hu, and Markus W. Ribbe
8. Assays of Nitrogenase Reaction Products
William E. Newton and Michael J. Dilworth
9. Methods for Nitrogenase-Like Dark Operative Protochlorophyllide Oxidoreductase
Markus J. Bröcker and Jürgen Moser
Part III: Spectroscopic Methods
10. X-Ray Crystallography
Lauren E. Roth and F. Akif Tezcan
11. X-Ray Absorption Spectroscopy
Serena DeBeer
12. Small Angle X-Ray Scattering Spectroscopy
David W. Mulder and John W. Peters
13. Electron Paramagnetic Resonance Spectroscopy
Karamatullah Danyal, Zhi-Yong Yang, and Lance C. Seefeldt
14. Magnetic Circular Dichroism Spectroscopy
Brian J. Hales
15. Mössbauer Spectroscopy
Boi Hanh Huynh
Part IV: Chemical Methods
16. Protocols for Cofactor Isoation of Nitrogenase
Aaron W. Fay, Chi-Chung Lee, Jared A. Wiig, Yilin Hu, and Markus W. Ribbe
17. Techniques for Functional and Structural Modeling of Nitrogenase
Patrick L. Holland
Part V: Theoretical Calculations
18. Nitrogenase Structure and Function Relationships by Density Functional Theory
Travis V. Harris and Robert K. Szilagyi
19. Modeling the MoFe Nitrogenase System with Broken Symmetry Density Functional Theory
Gregory M. Sandala and Louis Noodleman
Compiles a detailed collection of techniques to study one of the most difficult problems in protein biochemistry
Features practical, step-by-step methodologies
Includes key tips and expert implementation advice to ensure successful results
Includes supplementary material: sn.pub/extras
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